Friday, 6 October 2006
South Ballroom (Binghamton Regency Hotel and Conference Center)
428

Structural analysis of oligosaccharide-attenuated function in a glycoprotein

Lin Zhang, James M. Gibson, and James G. Kempf. Rensselaer Polytechnic Institute, Troy, NY

Glycosylation is the most frequent post-translational modification of proteins. However, characterization of glycoproteins remains elusive due to their poor receptivity to current structural methods and difficulties in sample preparation. Here, we use (1H,15N) nuclear magnetic resonance (NMR) to characterize structural perturbations of the enzyme, Ribonuclease B (RNase B), relative to its pre-glycosylated form, RNase A. RNase is an excellent model system for the study of glycoproteins because of significant previous work on RNase A catalysis, structure and dynamics. Much less is known about RNase B. The oligosaccharide attaches at the non-catalytic Asn34, over 15 Å from the active site. Its presence is known to reduce catalytic activity in RNase B, but the mechanism of this modulation is not understood. Previous (1H, 2H) exchange NMR revealed overall rigidification of RNase B relative to A [Joao & Dwek, Eur. J. Biochem. (1993)], while other studies demonstrated the importance of structural flexibility to RNase A catalysis [Cole & Loria, Biochemistry (2002)]. To explore lost activity in terms of the reduced motional freedom in RNase B, we characterized differential A and B structure using natural-abundance 15N samples for two-dimensional (1H,15N) NMR of RNase B. We have assigned ~80% of the amide resonances by comparison with temperature-dependent RNase A chemical shifts. Differential RNase A-B shifts indicate minimal structural perturbations to the glycoprotein backbone. The absence of changes supports our hypothesis that reduced RNase B flexibility contributes to functional losses. We present strategies for future elucidation of RNase B dynamics via spin-relaxation NMR.

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